Function reference • rbims

KEGG analysis Functions used for KEGG
`read_ko()`	Read the output of KofamScan/KofamKoala or KAAS.
`mapping_ko()`	Maps KOs to the KEGG database.
InterProScan analysis Functions used for InterProScan analysis
`read_interpro()`	Extract abundance profile of InterProScan output.
Manipulate KEGG/InterproScan profile Functions used to manipulate the KEGG/InterproScan profile
`get_subset_unique()`	Unique abundance profile.
`get_subset_pca()`	Metabolism PCA.
`get_subset_pathway()`	Subsets the mapped KO table based on pathways.
`calc_binary()`	Calculate presence/absence.
`calc_percentage()`	Calculate the percentage.
Plot KEGG/InterproScan profile Functions used to plot the KEGG/InterproScan profile
`plot_bubble()`	Bubble plot.
`plot_heatmap()`	Heatmap

Reference