InternalObjetos usados solo en las viñetas. |
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interpro_INTERPRO_long |
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interpro_INTERPRO_profile |
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interpro_KEGG_long |
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interpro_map |
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interpro_pfam_long |
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interpro_pfam_profile |
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Output of mapping_ko |
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Output of read_ko |
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Metadata |
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Main Rbims |
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Read the output of KofamScan/KofamKoala or KAAS. |
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KEGG analysisFunctions used for KEGG |
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Read the output of KofamScan/KofamKoala or KAAS. |
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Maps KOs to the KEGG database. |
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Read the output of PICRUSt2 |
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Metabolism table |
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InterProScan analysisFunctions used for InterProScan analysis |
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Extract abundance profile of InterProScan output. |
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MEROPS analysisFunctions used for MEROPS analysis |
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Read the output of merops and extract abundance profile |
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dbCAN analysisFunctions used for dbCAN analysis |
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Read the output of dbCAN and extract abundance profile |
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Manipulate KEGG/InterproScan profileFunctions used to manipulate the KEGG/InterproScan profile |
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Unique abundance profile. |
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Metabolism PCA. |
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Subsets the mapped KO table based on pathways. |
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Calculate presence/absence. |
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Calculate the percentage. |
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Plot KEGG/InterproScan profileFunctions used to plot the KEGG/InterproScan profile |
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Bubble plot. |
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Heatmap |