read a table created in PICRUSt2 and gives format to downstream analysis
read_picrust2(data_picrust2, profile=TRUE, write=FALSE,
database= c("KO", "EC", "pathway"))a table, output of PICRUSt2 on tsv format.
a logical value indicating if you want to print a profile or not.
a logical value indicating to save the data imported as a formatted table with .tsv extension with a time stamp
a character indicating for which database do you want to get the abundance profile. Valid options are "KO", "EC" or "pathway".
This function is part of a package used for the analysis of bins metabolism.
if (FALSE) { # \dontrun{
read_picrust2(data_picrust2="inst/extdata/pred_metagenome_unstrat.tsv",
database="KO", profile = F, write=F)
} # }