Metabolism table — write_metabolism • rbims

Creates a metabolism table that includes the information from KEGG and Interpro annotation.

write_metabolism(data_interpro=NULL, data_ko=NULL)

Arguments

data_interpro: a table, output of InterProScan on tsv format. InterProScan should have been run with -pa option to be able to use the KEGG option, in the database argument.
data_ko: path to the directory where the KEGG output files are.

This function is part of a package used for the analysis of bins metabolism.

if (FALSE) { # \dontrun{
write_metabolism("inst/extdata/Interpro_test.tsv", 
"inst/extdata/")
} # }